LBE: Location Based Estimator
LBE is an efficient procedure for estimating the proportion of true null hypotheses, the false discovery rate and the q-values.
Dalmasso C, Broet P, Moreau T (2005): A simple procedure for estimating the false discovery rate. Bioinformatics, 21: 660 - 668. [Journal website]
The LBE package is available on the Bioconductor website.